Altre opportunità

The “Pôle de Lanaud”, next to Limoges, is the headquarters of the Limousin breed. It includes a biotechnology company, specialized in genomics applied to animal selection and the national qualification station. Genetics from the French breeding programme is a world reference.

The goal of the biotechnology structure is to carry out genomic projects and develop selection tools to help breeders evaluate the genetic potential of cattle. Job Description: We are looking for a highly motivated scientist to expand our team in Limoges, France. This is a full-time permanent position and is available immediately. The project will include the following tasks:

- Development and Implementation of genomic prediction model.

Development of statistical / computational methodology for the analysis of genetic and genomic datasets. Genome bioinformatics analysis.

- Development and maintenance of data analysis pipelines. Quality control for results production.

- Scientific monitoring, Summarize and communicate results. Writing reports. Requirements:

- Ph.D. degree in Biostatistics or Computational Biology. A first successful experience in genomics is an asset.

- Strong programming skills in one programming language are required.

Scripting languages (e.g. Perl, Python, Fortran, R), programming languages (e.g. Java, C/C++) and database management system are a plus.

- Good expertise in predictive and Bayesian statistics. Ability to apply concepts of quantitative genetics (BLUP) is appreciated.

- Knowledge in mathematics (Matrix computations) or statistics (linear regression, predictive statistics, factorial analysis, PCA, graph theory, machine learning, Bayesian and Likelihood inferences) will be appreciated.

- Solid knowledge of spoken and written English and basics in French with strong motivation to learn.

Salary according to profile and experience of the candidate. You want to work in an atypical and green surroundings, in the heart of the Limousin hills and join a convivial and dynamic team? So, do not hesitate, apply!

recrutement@limousine.org

Valorisation of bovine sequence data 12-month fixed-term contract available from February 2022 in Guadeloupe (FrenchWest Indies) Scientific presentation of the research project:

The objective of the study will involve, on the one hand, the study of thevariability of the genome in the Creole cattle and search for the maingenomic regions that explain the originality of this breed.Secondly, it deals with identification, on the basis of this genomic
characterisation, of the main functions that could be linked to its production and adaptation aptitudes.
Finally, based on these results, it has to propose recommendations for the management of the population, in order to help its conservation and genetic improvement.
The missions consist of aligning the sequencing and genotyping data with the latest available alignment of the bovine genetic map (UCD1.2), identifying and classifying the variants (SNPs, INDELs, CNVs) identified within the Creole bovine population, and carrying out Functional analysis, particularly for the original variants, comparing these data with a panel of breeds for which similar information is available, and carrying out an analysis of footprints of selection and the interpretation of the biological functions associated with the Regions identified.
To carry out this study, complete genome sequencing data on 23 representative bulls of the Creole breed is available, as well as genotyping data at different densities on 1200 animals from the selection nucleus.
Skills required: PhD in Biology, Integrative Biology Bioinformatics or Engineering degree.
Contact: Nathalie Mandonnet  Animal Research Unit / Guadeloupe (FWI) Address: Domaine Duclos, 97170 Petit-Bourg (Guadeloupe), France. 

 nathalie.mandonnet@inrae.fr
 +590 690293802
 +590 590255408

MaxSIP provides the opportunity for highly motivated Bachelor and Master students to join one of the labs at the two participating Max Planck Institutes to conduct a 10-week summer research internship project. The fully-funded program will allow participating students to become familiar with different scientific approaches and advanced laboratory methods. The aim of our internship program is to provide excellent students with a broad range of research experiences and knowledge to promote them early on in their career.

Allegato 

We are looking for an enthusiastic PhD candidate, with a keen interest in developing statistical models for genomic prediction, and a background in quantitative or statistical genetics or a related field.

The PhD will be employed at a newly funded H2020 project GEroNIMO: Genome and Epigenome eNabled breeding in MOnogastrics (https://www.geronimo-h2020.eu/). GEroNIMO aims at developing innovative knowledge and tools to promote genome and epigenome- enabled methods for selection methods to be used in pig and chicken.
The project is a collaboration between several European academic Universities and industrial partners. The candidate will be employed at Wageningen University, Animal Breeding and Genomics. Specifically, the PhD candidate will be involved in a project aiming to
develop models that:
- Allow to dissect phenotypic variation to its different underlying sources, including structural genomic and epigenetic variation
- Enable genomic prediction taking advantage of variation in individual epigenetic profiles. The candidate will be involved in developing the models, curation of data, and performing the statistical analyses. The results thePhD candidate produces may be used to improve genomic prediction models used in practice and thereby contribute to a more sustainable animal production.
The candidate should have:
- A strong Master’s degree in a relevant quantitative field   (Quantitative genetics, Statistical genetics, Statistics);
- A strong interest in fundamental and applied research;
- A strong interest in animal genetics;
- A strong interest in statistical genetic analysis;
- Knowledge on computer scripting (e.g experience with Linux, R);
- Be creative and innovative;
- Good organisational and (written and spoken) communication skills
  in English, as well as a; proven ability to collaborate with others;
- Willingness to travel internationally, to attend international
  project meetings and conferences and visit other institutes.
More information about the PhD position can be found here: https://tinyurl.com/yf4vewoz Closing date is 13th December 2021. Submit your application online through the link above. Please provide the requested details and upload both a motivation letter and CV. 

The Animal Breeding and Genomics group is looking for a researcher with expertise in the analyses of whole genome sequences to contribute to research to identify functional genetic variants in pigs to improve genomic selection.  We are looking for an enthusiastic researcher, with a clear interest in bioinformatics, animal breeding and genomics. The project addresses fundamental questions related to variation in gene expression and how such variations affect phenotypic variation. Key to the approach is the identification of gene expression quantitative trait loci (eQTLs) at high resolution. These will be combined with genome wide epigenetic data to identify the most likely underlying regulatory variants using a support vector machine (SVM) based computational method. Experience with handling large phenotypic and genomic datasets and an interest in computational biology is a prerequisite. The position is funded by the Dutch research organisation NWO within a public private partnership project in collaboration with the pig breeding company Topigs Norsvin.

For more information and to submit your application see the link  Postdoc

in the area of bioinformatics / genomics - WUR

Posted: Oct 19, 2021

A postdoctoral research fellowship position is available to participate ingenomic analyses and molecular studies of inherited diseases using the dog as a model organism. Although emphasis initially will be on diseases affecting the retina and/or central nervous system, studies will be more broadly based, and not limited to these organ systems with every new
project and collaboration initiated. Research areas emphasize pedigree data collection, phenotype ascertainment, candidate gene analysis, GWAS, and next generation sequencing.

The candidate is required to have experience in either: SNP arrays, GWAS, genetic mapping and population genetics; or NGS data analysis - whole genome sequencing and variant calling pipelines, RNA-seq and gene expression. Candidates are expected to have experience in R and a scripting language, and familiarity with data analysis and statistical methods. Any background in most techniques used in molecular biology and genetics is
optional but advantageous.

Fellowship length is 2 years with the optional prolongation of 1 year. A starting date is on or about February 1, 2022, and the candidate will join the newly established Sylvia M. VanSloun Laboratory for Canine Genomic Analysis and ongoing research group working on inherited eye diseases (drs. Aguirre, Guziewicz, Miyadera and Murgiano). Stipend level and benefits are based on the NIH Ruth L. Kirschstein NRSA guidelines.

The University of Pennsylvania is a major research university with very strong programs in genetics, genomics and gene therapy. Resources available to the training program include, but are not limited to, strong multi-departmental and multi-faculty programs of collaboration, research and training. Our aim is an integrate environment of molecular and
computational biology researchers that rewards initiative and curiosity toward structural and population genetics of the model organism.
Computing services the Postdoc will utilize include the High-performance Computer Cluster of the Perelman School of Medicine.The system is managed by Penn Medicine Academic Computing Services, the central IS/IT department for the Penn Med. Qualifications Ph.D. DVM or MD candidates with experience in genomic approaches for genetic variants mapping and discovery, high-throughput sequencing and analysis will be prioritized. A background in
molecular biology techniques will be valued but has priority compared to knowledge in coding and data analysis.
For more information on the program or to submit an application please email Dr. Leonardo Murgiano (Murgiano, Leonardo. Applicants should provide a letter of intent, curriculum vitae, and the name and contact information of 3 references).
Email: leomur@vet.upenn.edu

PhD position Faculty of Veterinary Medicine of the University of Lisbon, in Lisbon, Portugal (11-5-2021)

The Centre for Interdisciplinary Research in Animal Health (CIISA) is a research unit of Excellence located at the Faculty of Veterinary Medicine of the University of Lisbon, in Lisbon, Portugal.

The Laboratory of Animal Genetic Resources (LAnGr) has a long track record of research focused in the conservation of local breeds while contributing to the development of an economic market for products of added value. LAnGr is taking part in the 2021 CIISA PhD fellowship program, aimed at attracting young talented scientists who wish to pursue doctoral studies at this research centre.

LAnGr has an open PhD proposal under the CIISA PhD fellowship program. The fellow will work on the project “Litter size in Alentejano sows: a consequence of crosstalks between the Oak tree ecosystem, DNA methylation and Genes“ led by Andreia J. Amaral.

This project is linked to a funded H2020 project with a large network of partners in EU that includes academia and the industry. The fellow will be working in Portugal and the program will include short term missions at Wageningen University in the Netherlands as a visiting PhD student, one of the project partners.

If you have a background in Animal Science, Genomics and/or Bioinformatics and have an interest in exploring the link between Phenotype and Epigenetics please contact: andreiaamaral@fmv.ulisboa.pt for more details on the application procedure.

The call closes June 3rd 2021.

Geneticist positions at EGENES-Scotland's Rural College
(Edinburgh, UK) (6-5-2021)

Two open Geneticist positions at EGENES-Scotland's Rural College (Edinburgh, UK):    Type: Permanent Salary: £31,750 - £37,263 per annum Location: SRUC Roslin Institute Building, Bush Estate, Edinburgh, UK REF: ACF/AHES/064/21

Closing date: 23 May 2021    SRUC is unique in Scotland and one of the largest organisations of its kind in Europe. Our ambitious and exciting vision is to work at local, national and international levels, leading innovation and sustainable development in agriculture and rural sectors.

This is an opportunity to be a major contributor in a team leading research in animal breeding and genetics and working closely with the livestock industry providing routine genetic/genomic evaluations and decision support tools for farmers. The successful candidate will work within an integrated group of 25 programmers and geneticists, 5 of which work within EGENES.
   https://ww1.sruc.ac.uk/connect/jobs/list-of-vacancies/      Samir Id-Lahoucine,   Geneticist,  Scotland's Rural College,  E-mail: mailto:Samir.IdLahoucine@sruc.ac.uk