Lista delle pubblicazioni scientifiche
[1] Mohsen Farshad, Mark J DelloStritto, Antonio Suma, and Vincenzo Carnevale. “Detecting Liquid–Liquid Phase Separations Using Molecular Dynamics Simulations and Spectral Clustering”. In: The Journal of Physical Chemistry B (2023).
[2] Pierluigi Scalia, Carmen Merali, Carlos Barrero, Antonio Suma, Vincenzo Carnevale, Salim Merali, and Stephen J Williams. “Novel Isoform DTX3c Associates with UBE2N-UBA1 and Cdc48/p97 as Part of the EphB4 Degradation Complex Regulated by the Autocrine IGF-II/IRA Signal in Malignant Mesothelioma”. In: International Journal of Molecular Sciences 24.8 (2023), p. 7380.
[3] Antonio Suma, Vincenzo Carnevale, and Cristian Micheletti. “Nonequilibrium thermodynamics of DNA nanopore unzipping”. In: Physical Review Letters 130.4 (2023), p. 048101.
[4] Anushree Dutta, Kosti Tapio, Antonio Suma, Amr Mostafa, Yuya Kanehira, Vincenzo Carnevale, Giovanni Bussi, and Ilko Bald. “Molecular states and spin crossover of hemin studied by DNA origami enabled single-molecule surface-enhanced Raman scattering”. In: Nanoscale 14.44 (2022), pp. 16467–16478.
[5] Giuseppe Negro, C Basilio Caporusso, Pasquale Digregorio, Giuseppe Gonnella, Antonio Lamura, and Antonio Suma. “Hydrodynamic effects on the liquid-hexatic transition of active colloids”. In: The European Physical Journal E 45.9 (2022), p. 75.
[6] Yang Xin, Petteri Piskunen, Antonio Suma, Changyong Li, Heini Ijäs, Sofia Ojasalo, Iris Seitz, Mauri A Kostiainen, Guido Grundmeier, Veikko Linko, et al. “Environment-Dependent Stability and Mechanical Properties of DNA Origami Six-Helix Bundles with Different Crossover Spacings”. In: Small 18.18 (2022), p. 2107393.
[7] Matteo Becchi, Pietro Chiarantoni, Antonio Suma, and Cristian Micheletti. “RNA Pore Translocation with Static and Periodic Forces: Effect of Secondary and Tertiary Elements on Process Activation and Duration”. In: The Journal of Physical Chemistry B 125.4 (2021), pp. 1098–1106.
[8] Willow Coyote-Maestas, David Nedrud, Antonio Suma, Yungui He, Kenneth A Matreyek, Douglas M Fowler, Vincenzo Carnevale, Chad L Myers, and Daniel Schmidt. “Probing ion channel functional architecture and domain recombination compatibility by massively parallel domain insertion profiling”. In: Nature communications 12.1 (2021), pp. 1–16.
[9] Quentin Novinger*, Antonio Suma*, Daniel Sigg, Giuseppe Gonnella, and Vincenzo Carnevale. “Particle- based Ising model”. In: Physical Review E 103.1 (2021), p. 012125.
[10] Massimiliano Semeraro, Antonio Suma, Isabella Petrelli, Francesco Cagnetta, and Giuseppe Gonnella. “Work fluctuations in the active Ornstein–Uhlenbeck particle model”. In: Journal of Statistical Mechanics: Theory and Experiment 2021.12 (2021), p. 123202.
[11] Kosti Tapio, Amr Mostafa, Yuya Kanehira, Antonio Suma, Anushree Dutta, and Ilko Bald. “A Versatile DNA Origami-Based Plasmonic Nanoantenna for Label-Free Single-Molecule Surface-Enhanced Raman Spectroscopy”. In: ACS nano 15.4 (2021), pp. 7065–7077.
[12] Jinglei Xiao, Vasyl Bondarenko, Yali Wang, Antonio Suma, Marta Wells, Qiang Chen, Tommy Tillman, Yan Luo, Buwei Yu, William P. Dailey, Roderic Eckenhoff, Pei Tang, Vincenzo Carnevale, Michael L. Klein, and Yan Xu. “Regulation and drug modulation of a voltage-gated sodium channel: Pivotal role of the S4–S5 linker in activation and slow inactivation”. In: Proceedings of the National Academy of Sciences 118.28 (2021).
[13] Elaine Yang, Weiming Bu, Antonio Suma, Vincenzo Carnevale, Kimberly C Grasty, Patrick J Loll, Kellie Woll, Natarajan Bhanu, Benjamin A Garcia, Roderic G Eckenhoff, et al. “Binding Sites and the Mechanism of Action of Propofol and a Photoreactive Analogue in Prokaryotic Voltage-Gated Sodium Channels”. In: ACS Chemical Neuroscience 12.20 (2021), pp. 3898–3914.
[14] Pietro Chiarantoni, Francesco Cagnetta, Federico Corberi, Giuseppe Gonnella, and Antonio Suma. “Work fluctuations of self-propelled particles in the phase separated state”. In: Journal of Physics A: Mathematical and Theoretical 53.36 (2020), 36LT02.
[15] Jingyuan Huang, Antonio Suma, Meiying Cui, Guido Grundmeier, Vincenzo Carnevale, Yixin Zhang, Charlotte Kielar, and Adrian Keller. “Arranging Small Molecules with Subnanometer Precision on DNA Origami Substrates for the Single-Molecule Investigation of Protein–Ligand Interactions”. In: Small Struc- tures (2020), p. 2000038.
[16] Isabella Petrelli, Leticia F. Cugliandolo, Giuseppe Gonnella, and Antonio Suma. “Effective temperatures in inhomogeneous passive and active bidimensional Brownian particle systems”. In: Phys. Rev. E 102 (2020), p. 012609.
[17] Antonio Suma, Lucia Coronel, Giovanni Bussi, and Cristian Micheletti. “Directional translocation resis- tance of Zika xrRNA”. In: Nature Communications 11 (2020), p. 3749.
[18] Antonio Suma, Daniele Granata, Andrew S. Thomson, Vincenzo Carnevale, and Brad S. Rothberg. “Polyamine blockade and binding energetics in the MthK potassium channel”. In: Journal of General Physiology 152.7 (2020).
[19] Antonio Suma, Alex Stopar, Allen W Nicholson, Matteo Castronovo, and Vincenzo Carnevale. “Global and local mechanical properties control endonuclease reactivity of a DNA origami nanostructure”. In: Nucleic Acids Research 48.9 (2020), pp. 4672–4680. Cover Article.
[20] Samuel J Black, Ahmet Y Ozdemir, Ekaterina Kashkina, Tatiana Kent, Timur Rusanov, Dejan Ristic, Yeonoh Shin, Antonio Suma, Trung Hoang, Gurushankar Chandramouly, et al. “Molecular basis of microhomology- mediated end-joining by purified full-length Polθ”. In: Nature communications 10.1 (2019), pp. 1–16.
[21] Antonio Suma, Erik Poppleton, Michael Matthies, Petr Šulc, Flavio Romano, Ard A. Louis, Jonathan P. K. Doye, Cristian Micheletti, and Lorenzo Rovigatti. “TacoxDNA: A user-friendly web server for simulations of complex DNA structures, from single strands to origami”. In: Journal of Computational Chemistry 40.29 (2019), pp. 2586–2595. Cover Article.
[22] Lucia Coronel, Antonio Suma, and Cristian Micheletti. “Dynamics of supercoiled DNA with complex knots: large-scale rearrangements and persistent multi-strand interlocking”. In: Nucleic Acids Research 46.15 (2018), pp. 7533–7541. Cover Article.
[23] Pasquale Digregorio, Demian Levis, Antonio Suma, Leticia F Cugliandolo, Giuseppe Gonnella, and Ignacio Pagonabarraga. “Full phase diagram of active Brownian disks: from melting to motility-induced phase separation”. In: Physical Review Letters 121.9 (2018), p. 098003. Editors’ Suggestion.
[24] Isabella Petrelli, Pasquale Digregorio, Leticia F. Cugliandolo, Giuseppe Gonnella, and Antonio Suma. “Ac- tive dumbbells: Dynamics and morphology in the coexisting region”. In: The European Physical Journal E 41.10 (2018), p. 128.
[25] Antonio Suma, Marco Di Stefano, and Cristian Micheletti. “Electric-Field-Driven Trapping of Polyelec- trolytes in Needle-like Backfolded States”. In: Macromolecules 51.12 (2018), pp. 4462–4470.
[26] Francesco Cagnetta, Federico Corberi, Giuseppe Gonnella, and Antonio Suma. “Large fluctuations and dynamic phase transition in a system of self-propelled particles”. In: Physical Review Letters 119.15 (2017), p. 158002.
[27] Leticia F Cugliandolo, Pasquale Digregorio, Giuseppe Gonnella, and Antonio Suma. “Phase Coexistence in Two-Dimensional Passive and Active Dumbbell Systems”. In: Physical review letters 119.26 (2017), p. 268002.
[28] Sophie E Jackson, Antonio Suma, and Cristian Micheletti. “How to fold intricately: using theory and experiments to unravel the properties of knotted proteins”. In: Current Opinion in Structural Biology 42 (2017), pp. 6–14.
[29] Antonio Suma and Cristian Micheletti. “Pore translocation of knotted DNA rings”. In: Proceedings of the National Academy of Sciences 114.15 (2017), E2991–E2997.
[30] Antonio Suma, Leticia F Cugliandolo, and Giuseppe Gonnella. “Tracer motion in an active dumbbell fluid”. In: Journal of Statistical Mechanics: Theory and Experiment 2016.5 (2016), p. 054029.
[31] Leticia F Cugliandolo, Giuseppe Gonnella, and Antonio Suma. “Fluctuations of rotational and translational degrees of freedom in an interacting active dumbbell system”. In: Chaos, Solitons & Fractals 81 (2015), pp. 556–566.
[32] Leticia F Cugliandolo, Giuseppe Gonnella, and Antonio Suma. “Rotational and translational diffusion in an interacting active dumbbell system”. In: Physical Review E 91.6 (2015), p. 062124.
[33] Giuseppe Gonnella, Davide Marenduzzo, Antonio Suma, and Adriano Tiribocchi. “Motility-induced phase separation and coarsening in active matter”. In: Comptes Rendus Physique 16.3 (2015), pp. 316–331.
[34] Antonio Suma, Enzo Orlandini, and Cristian Micheletti. “Knotting dynamics of DNA chains of different length confined in nanochannels”. In: Journal of Physics: Condensed Matter 27.35 (2015), p. 354102.
[35] Antonio Suma, Angelo Rosa, and Cristian Micheletti. “Pore Translocation of Knotted Polymer Chains: How Friction Depends on Knot Complexity”. In: ACS Macro Letters 4.12 (2015), pp. 1420–1424.
[36] Giuseppe Gonnella, Antonio Lamura, and Antonio Suma. “Phase segregation in a system of active dumb- bells”. In: International Journal of Modern Physics C 25.12 (2014), p. 1441004.
[37] Antonio Suma, Giuseppe Gonnella, Gianluca Laghezza, Antonio Lamura, Alessandro Mossa, and Leticia F Cugliandolo. “Dynamics of a homogeneous active dumbbell system”. In: Physical Review E 90.5 (2014), p. 052130.
[38] Antonio Suma, Giuseppe Gonnella, Davide Marenduzzo, and Enzo Orlandini. “Motility-induced phase separation in an active dumbbell fluid”. In: EPL (Europhysics Letters) 108.5 (2014), p. 56004. Editors’ Sug- gestion.